如果安装了mpi4py,它运行良好.
如果未安装mpi4py,则无法编译不使用MPI的代码.
编译Cython文件时出现错误.错误很长,它开始于:
In file included from /usr/include/c++/6/bits/ios_base.h:46:0,from /usr/include/c++/6/ios:42,from /usr/include/c++/6/ostream:38,from /usr/include/c++/6/iostream:39,from src_cpp/base/base_fft.h:10,from fluIDfft/fft2d/fft2d_with_fftw1d.cpp:543:/usr/include/c++/6/system_error:143:31: error: ‘error_category’ does not name a type error_code(int __v,const error_category& __cat) noexcept ^~~~~~~~~~~~~~/usr/include/c++/6/system_error:152:27: error: ‘error_category’ does not name a type assign(int __v,const error_category& __cat) noexcept ^~~~~~~~~~~~~~/usr/include/c++/6/system_error:172:11: error: ‘error_category’ does not name a type const error_category& ^~~~~~~~~~~~~~/usr/include/c++/6/system_error:191:11: error: ‘error_category’ does not name a type const error_category* _M_cat;[...]
我想这可能是一个C 11问题(http://en.cppreference.com/w/cpp/error/error_category),但我没有看到如何解决问题.
编译命令是
g++ -pthread -fwrapv -O3 -Wall -Wno-unused-result -Wsign-compare -Wno-unused-result -Wsign-compare -fwrapv -O3 -Wall -fPIC -I/home/users/me/opt/miniconda3/include/python3.6m -I/home/users/me/opt/miniconda3/include -Isrc_cy -IfluIDfft/fft2d -IfluIDfft/fft3d -Isrc_cpp/base -Isrc_cpp/3d -Isrc_cpp/2d -Iinclude -I/home/users/me/opt/miniconda3/lib/python3.6/site-packages/numpy/core/include -c fluIDfft/fft2d/fft2d_with_fftw1d.cpp -o build/temp.linux-x86_64-3.6/fluIDfft/fft2d/fft2d_with_fftw1d.o
编辑最小,完整和可验证的示例
感谢Ashwin Vishnu(见https://bitbucket.org/fluiddyn/fluidfft/issues/7/fluidfft-installation-fails-without-mpi4py),我可以发布一个最小的例子
/* test.cpp */#include <Python.h>#include <string.h>#include <stdio.h>#include <cpu.h>#include <sys/time.h>#include <complex>#include <iostream>int main() { std::cout<<"Hello world"; return 0;}
从fluIDfft目录编译如下:
g++ $(python-config --include) -Iinclude/ test.cpp
如果我们注释掉cpu.h include,就没有错误.
文件cpu.h取自pyfftw代码:https://github.com/pyFFTW/pyFFTW/blob/master/include/cpu.h
解决方法 发生这种情况是因为包flowfft的Cython源文件依赖于 a C++ header filecpu.h
,其中以下预处理器行导致了问题: #if __STDC_VERSION__ >= 199901L /* "inline" is a keyword */#else# define inline#endif
我的猜测是新编译器严格重新定义保留关键字.根据essay on inline functions的提示,这段代码被替换为:
#if __STDC_VERSION__ >= 199901L /* "inline" is a keyword */#else# define INliNE#endif#ifndef INliNE# if __GNUC__ && !__GNUC_STDC_INliNE__# define INliNE static inline# else# define INliNE inline# endif#endif总结
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