我在更新R后在CentOS上的R中安装软件包时遇到了一些麻烦.下面是我尝试在R中安装软件包时会发生什么的示例:
> install.packages("ggplot2")Installing package into '/home/albers/R/x86_64-pc-linux-gnu-library/3.2'(as 'lib' is unspecifIEd)--- Please select a CRAN mirror for use in this session ---Error in download.file(url,destfile = f,quIEt = TRUE) : internet routines cannot be loadedIn addition: Warning message:In download.file(url,quIEt = TRUE) : unable to load shared object '/usr/local/lib64/R/modules//internet.so': /usr/local/lib64/R/modules//internet.so: undefined symbol: curl_multi_waithttpS CRAN mirror 1: 0-Cloud [https] 2: Austria [https] 3: Chile [https] 4: China (Beijing 4) [https] 5: Colombia (Cali) [https] 6: France (Lyon 2) [https] 7: France (Paris 2) [https] 8: Germany (M▒nster) [https] 9: Iceland [https] 10: Mexico (Mexico City) [https]11: Russia (Moscow) [https] 12: Spain (A Coru▒a) [https]13: Switzerland [https] 14: UK (Bristol) [https]15: UK (CambrIDge) [https] 16: USA (CA 1) [https]17: USA (KS) [https] 18: USA (MI 1) [https]19: USA (TN) [https] 20: USA (TX) [https]21: USA (WA) [https] 22: (http mirrors)Selection: 1Warning: unable to access index for repository https://cran.rstudio.com/src/contrib: internet routines cannot be loadedWarning message:package 'ggplot2' is not available (for R version 3.2.5)
所以我花了一些时间搜索错误消息.我更新了我现在最新的curl版本:
$curl -Vcurl 7.48.0 (x86_64-pc-linux-gnu) libcurl/7.48.0 zlib/1.2.8Protocols: dict file ftp gopher http imap pop3 rtsp smtp telnet tftpFeatures: IPv6 Largefile libz UnixSockets
仍然无法安装包,并收到相同的错误消息.所以我尝试按照this post的说明,特别是将以下命令添加到我的.bash_profile:
export LD_liBRARY_PATH=$TOolS/curl-7.48.0/lib:$LD_liBRARY_PATH
我再次得到关于R无法加载共享对象的相同错误消息.最终这是一个下载问题,因为download.file也失败了.这是我的sessionInfo():
R version 3.2.5 (2016-04-14)Platform: x86_64-pc-linux-gnu (64-bit)Running under: CentOS release 6.2 (Final)locale: [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C [3] LC_TIME=en_US.iso885915 LC_ColLATE=en_US.iso885915 [5] LC_MONETARY=en_US.iso885915 LC_MESSAGES=en_US.iso885915 [7] LC_PAPER=en_US.iso885915 LC_name=C [9] LC_ADDRESS=C LC_TELEPHONE=C[11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=Cattached base packages:[1] stats graphics Grdevices utils datasets methods base
我可以使用wget和curl下载文件但是一旦我启动R,我就无法下载任何内容.
有没有人对我如何解决这个问题有任何建议?
最佳答案试试吧.install.packages("ggplot2",repos="http://cran.cnr.berkeley.edu")
或者在安装之前将下载工具更改为其他内容,即在linux上,您可以尝试按如下方式进行 *** 作.
options(download.file.method = "wget")
注意,我已经删除了https for http.我有类似的错误……
Selection: 1Warning: unable to access index for repository https://cran.rstudio.com/src/contrib: unsupported URL schemeWarning message:package ‘ggplot2’ is not available (for R version 3.2.3)
如果你从你的问题中查看以下行的输出…
YoursProtocols: dict file ftp gopher http imap pop3 rtsp smtp telnet tftpmine (Also Centos 6)Protocols: tftp ftp telnet dict ldap ldaps http file https ftps scp sftp
您的卷曲缺少https支持.输出中的curl_multi_wait也有错误.这是在7.28.0中添加的.
https://curl.haxx.se/libcurl/c/curl_multi_wait.html
如果你需要在本地构建curl,请执行此 *** 作
mkdir -p $HOME/curlcd $HOME/curlgit clone https://github.com/curl/curl.gitcd curlbash buildconf./configure --prefix=$HOME/libcurlmakemake install
此时,您需要在.bash_profile中设置LD_liBRARY_PATH即
export LD_liBRARY_PATH=$HOME/libcurl/lib:$LD_liBRARY_PATH
然后退出并再次返回或
source ~/.bash_profile
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