bioconda安装记录

bioconda安装记录

1、添加用户

adduser san
passwd san
chmod 644 /etc/sudoers
vi /etc/sudoers
san    ALL=(ALL)       ALL

2、获取miniconda3，安装到/home/san/miniconda3

su san
cd /home/san
mkdir software
cd software
wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Linux-x86_64.sh --no-check-certificate
bash Miniconda3-latest-Linux-x86_64.sh

3、配置conda源，pip源

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/msys2/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/r/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/qiime2/
conda config --set show_channel_urls yes

cd
mkdir .pip
cd .pip
vi pip.conf
[global]
index-url = https://pypi.tuna.tsinghua.edu.cn/simple
[install]
trusted-host = https://pypi.tuna.tsinghua.edu.cn
:wq!

4、创建环境

conda create -y --name airflow python=3.7