Blast是软件还是网页？

BLAST (Basic Local Alignment Search Tool )：基本局部相似性比对搜索工具。目前对数据库搜索常用的办法是通过 NCBI 、EBI 等国际著名生物信息中心的 BLAST 服务器进行搜索。

http://blast.ncbi.nlm.nih.gov/Blast.cgi这是我常用的

NCBI-Blast: https://blast.ncbi.nlm.nih.gov/Blast.cgi

EMBL-Blast: https://www.ebi.ac.uk/Tools/sss/ncbiblast/nucleotide.html

Clustal Omega: https://www.ebi.ac.uk/Tools/msa/clustalo/

MAFFT: https://www.ebi.ac.uk/Tools/msa/mafft/

Seq2Logo: https://services.healthtech.dtu.dk/service.php?Seq2Logo-2.0

Blast2Logo: https://services.healthtech.dtu.dk/service.php?Blast2logo-1.1

MEGA: https://megasoftware.net

Clustal Omega: https://www.ebi.ac.uk/Tools/msa/clustalo/

BioEdit: https://www.bioedit.com

BioEdit: https://www.bioedit.com

Promoter: https://services.healthtech.dtu.dk/service.php?Promoter-2.0

Softberry: http://linux1.softberry.com

PlantCARE: http://bioinformatics.psb.ugent.be/webtools/plantcare/html

Plant: https://www.dna.affrc.go.jp/PLACE/?action=newplace

TransFac: http://gene-regulation.com/

JASPAR: https://jaspar.genereg.net/

EPD: https://epd.epfl.ch/index.php

NetStart: https://services.healthtech.dtu.dk/service.php?NetStart-1.0

GSDS: http://gsds.cbi.pku.edu.cn

BGEE: https://bgee.org

NCBI ORF: http://www.ncbi.nlm.nih.gov/projects/gorf/orfig.cgi

ProtScale: https://web.expasy.org/protscale/

ProtParam: https://web.expasy.org/protparam/ <br />氨基酸数目、分子量（Da 道尔顿）、等电点（酸性：<7，碱性：>7）、不稳定指数（40）、亲水性（正：亲水，负：疏水）

PredictkProtein: https://www.predictprotein.org/

NCBI CDD: https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

SMART: http://smart.embl-heidelberg.de

ProSite: https://prosite.expasy.org/

PFam: http://pfam.xfam.org/search/sequence

HMMER: https://www.ebi.ac.uk/Tools/hmmer/

MEME: http://meme-suite.org/

NPSA SOPMA: https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html

PSI Pred: http://bioinf.cs.ucl.ac.uk/psipred/#

Swiss-Model: https://swissmodel.expasy.org/

Robetta: http://robetta.bakerlab.org/

CPHmodels: http://www.cbs.dtu.dk/services/CPHmodels

Phyre2: http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index

SwissModel: https://swissmodel.expasy.org

MSD: https://www.ebi.ac.uk/msd-srv/ssm/

NetPhos: https://services.healthtech.dtu.dk/service.php?NetPhos-3.1

NetNGlyc: https://services.healthtech.dtu.dk/service.php?NetNGlyc-1.0

YinOYang: https://services.healthtech.dtu.dk/service.php?YinOYang-1.2

SCRATCH: http://www.ics.uci.edu/~baldig/scratch/index.html

ProteinAtlas: http://www.proteinatlas.org/ENSG00000186350-RXRA/cell

GeneCards: https://www.genecards.org

ProteinAtlas: https://www.proteinatlas.org

TargetP: https://services.healthtech.dtu.dk/service.php?TargetP-2.0

PSORT: https://www.genscript.com/psort.html

PSORT: http://psort1.hgc.jp/form.html

Plant: http://wolfpsort.org

NLStradamus: http://www.moseslab.csb.utoronto.ca/NLStradamus/

DeepTMHMM: https://dtu.biolib.com/app/DeepTMHMM/run

TMHMM: https://services.healthtech.dtu.dk/service.php?TMHMM-2.0

TMpred: http://www.ch.embnet.org/software/TMPRED_form.html

SOSUI: http://harrier.nagahama-i-bio.ac.jp/sosui/sosui_submit.html

SignalP: https://services.healthtech.dtu.dk/service.php?SignalP-5.0

StringDB: https://string-db.org

GO: http://geneontology.org

KEGG: https://www.genome.jp/kegg/

KEGG: https://www.kegg.jp

BlastKOALA: https://www.kegg.jp/blastkoala/

GhostKOALA: https://www.kegg.jp/ghostkoala/

KofamKOALA: https://www.genome.jp/tools/kofamkoala/

DAVID: https://david.ncifcrf.gov

KOBAS: http://kobas.cbi.pku.edu.cn

G-Profile: https://biit.cs.ut.ee/gprofiler/gost

Enrichr: https://maayanlab.cloud/Enrichr/

MetaScape: http://metascape.org/gp/index.html#/main/step1

FunRich: http://funrich.org/

GuoLab: http://bioinfo.life.hust.edu.cn/guo_lab#!/

Plant TFDB: http://planttfdb.gao-lab.org/

Animal TFDB: http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/

Human TFDB: http://bioinfo.life.hust.edu.cn/HumanTFDB#!/

Animal: http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/tfbs_predict

HOCOMOCO: https://hocomoco11.autosome.ru

JASPAR: https://jaspar.genereg.net

FootPrintDB: http://floresta.eead.csic.es/footprintdb/?search

DRV: https://drv.brc.hu/

TFBSShape: https://tfbsshape.usc.edu

WebLogo: http://weblogo.threeplusone.com

HTFtarget: http://bioinfo.life.hust.edu.cn/hTFtarget#!/

JASPAR: https://jaspar.genereg.net

TRRUST: https://www.grnpedia.org/trrust/

ChipBase: https://rna.sysu.edu.cn/chipbase/index.php

CistromeDB: http://cistrome.org/db/#/

CancerTarget: http://cistrome.org/CistromeCancer/CancerTarget/

TCGAEnhancer: http://cistrome.org/CistromeCancer/TCGA_enhancer/

TransFac: https://new.bio-store.org/#

GenexPlain: https://platform.genexplain.com/bioumlweb/#

HOMER: http://homer.ucsd.edu/homer/motif/

KnockTF: http://www.licpathway.net/KnockTF/index.html

TF DBD: https://transcriptionfactor.org

Promoter: https://services.healthtech.dtu.dk/service.php?Promoter-2.0

GTRD: http://gtrd.biouml.org/#!

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